Valentin Guignon

Institute:

Bioversity International

Public e-mail:

v [dot] guignon [at] cgiar [dot] org

Research Interests:

Comparative Genomics, Phylogeny, RNA structure, algorithm, user interface,...

Species of interest:

Banana, Cocoa, Coffee, Oil palm, Sugarcane

Projects: Banana Genome Hub, Chado Controller, Coffee Genome Hub, GNPAnnot, GNPAnnotDB, GreenPhyl

Custom message:

Welcome!

I work at Bioversity International as a bioinformatics specialist on the GreenPhyl and MGIS projects and I also still work from times to times on the GNPAnnot project and other South Green matters.

Publication(s):

Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al.. Submitted. {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract

Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P. Submitted. Agronomic Linked Data ({AgroLD}): A knowledge-based system to enable integrative biology in agronomy. 13:1–17. Abstract

Nti-Addae Y, Matthews D, Ulat VJ, Syed R, Sempere G, Petel A, Renner J, Larmande P, Guignon V, Jones E et al.. Submitted. Benchmarking Database Systems for Genomic Selection Implementation. :baz096. Abstract

Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P. 2018. Agronomic Linked Data ({AgroLD}): a Knowledge-based System to Enable Integrative Biology in Agronomy.

Larmande P, Venkatesan A, Zhang L, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P. 2018. Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLOS ONE.

Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al.. 2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al.. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. 2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract

Cenci A, Guignon V, Roux N, Rouard M. 2014. Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.. Plant molecular biology. Abstract

10.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF et al.. 2013. The Banana Genome Hub. Database. 2013 Abstract

11.

D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al.. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract

12.

Guignon V, Droc G, Alaux M, Baurens F-C, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S. 2012. Chado controller: advanced annotation management with a community annotation system.. Bioinformatics (Oxford, England). 28(7):1054-6. Abstract

13.

Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al.. 2011. The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.

14.

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2011. GreenPhylDB v2.0: comparative and functional genomics in plants.. Nucleic acids research. 39(Database issue):D1095-102. Abstract

15.

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2010. GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Research. Abstract

16.

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M et al.. 2008. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucl. Acids Res.. 36:W465-469. Abstract

17.

Guignon V, Chauve C, Hamel S. 2005. An edit distance between RNA stem-loops. LECTURE NOTES IN COMPUTER SCIENCE. 3772:335-347. Abstract

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