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Galaxy
: analyze your data with various tools and workflows
Haplophyle
: From genotype to visually enhanced haplotype network
InTreeGreat
: a new way to explore gene trees
RAP-Green
: a new implementation of RAP to reconcile gene trees for plants
SNiPlay
: discover and analyse SNPs
TOGGLE
: Toolbox for generic NGS analyses
VCFHunter
: Manipulate vcf files, perform chromosome painting
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