SNiPlay

SNiPlay is a web-based tool for SNP and polymorphism analysis. From sequencing traces, alignment or allelic data given as input, it detects or extracts SNP and insertion/deletion events. In a second step, it sends sequences and allelic data into an integrative pipeline: 

  • Mapping and annotation (genomic position, intron/exoni, synonym/non-synonym)
  • Haplotype reconstruction
  • Haplotype network
  • Linkage disequilibrium
  • Diversity analysis

SNiPlay also integrates a database for SNP exploration.

Referent(s): 
Alexis Dereeper
Partner(s): 
IRD, INRA, CIRAD
Funding: 

ANR DLVitis (2009), ANR GnpAsso (2012)