VCFHunter
Website URL:
https://github.com/SouthGreenPlatform/VcfHunter VCFhunter regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered markers.
Referent(s):
Guillaume Martin Publication(s):
Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal. 2020.
Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 2019;36:97-111.
