Musa genomics training november 2013

Monday 18 November

• 9:00: Welcome
   
• 9:30-10:30: The Musa acuminata genome sequencing project

Angélique D'hont  

(Presentation)

• 10h45-11h45 : The Banana Genome Hub

Stéphanie Bocs and Gaetan Droc

(Presentation)

• 11h45-12h45 : Comparative genomics in Plants and GreenPhyl

Mathieu Rouard

(Presentation)

• 14h00-17h30 : Practical session

Mathieu Rouard, Valentin Guignon, Gaetan Droc, Alberto Cenci

(training material:  Exercises, Answers)

Tuesday 19 November

• 9:00 - 12:45: Introduction to Galaxy

Jean-François Dufayard, Félix Homa, Stéphanie Pointet  

(Course)

(Practical training)

• 14h00-17h30: Introduction to gene and TE annotation

Olivier Garsmeur

(Presentation)

Wednesday 20 November

• 9:00 - 10:00: Practical session: gene annotation pipeline

Stéphanie Bocs

(Exercises)

• 10:30 - 12:45: Practical session: gene annotation with Artemis

Franc-Christophe Baurens

(Exercises & Training material)

• 14h00-17h30: Practical session: gene annotation with Artemis

Alberto Cenci

(training material: Presentation,  Tutorial)

Thursday 21 November

• 9:00 - 12:45: Variant calling and SNiPlay

Alexis Dereeper, Gautier Sarah, Marilyne Summo, Hajar Chouiki Alilou and Félix Homa

(Presentation)

• 14h00-17h30: Practical session

Alexis Dereeper, Gautier Sarah, Maryline Summo and Hajar Chouiki Alilou

(Training material: Exercises)