Gautier Sarah

Institute:

INRA

Public e-mail:

gautier [dot] sarah [at] supagro [dot] inra [dot] fr

Research Interests:

NGS, Variant Detection, GBS, RNA-Seq

Species of interest:

Alfalfa, Durum wheat, Einkorn wheat, Grape

Projects: ARCAD, TOGGLE

Publication(s):

1.

Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. Submitted. Gigwa—Genotype investigator for genome-wide analyses. 5:25. Abstract

2.

Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, Perrier X, Glaszmann J-C, D'Hont A, Yahiaoui N. 2020. Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal.

3.

Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N et al.. 2016. A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.. Molecular ecology resources. Abstract

4.

Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. 2016. Gigwa—Genotype investigator for genome-wide analyses. Gigascience. 5:25.

5.

Rienth M, Torregrosa L, Sarah G, Ardisson M, Brillouet J-M, Romieu C. 2016. Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome. BMC Plant Biology. 16:164.

6.

Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M et al.. 2016. Evolutionary forces affecting synonymous variations in plant genomes. bioRxiv. :086231.

7.

Lartaud M, Perin C, Courtois B, Thomas E, Henry S, Bettembourg M, Divol F, Lanau N, Artus F, Bureau C et al.. 2015. PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification. Frontiers in Plant Science. 5

8.

Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. 2015. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research.

9.

Nabholz B, Sarah G, Sabot F, Ruiz M, Adam H, Nidelet S, Ghesquière A, Santoni S, David J, Glémin S. 2014. Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (O. glaberrima). Molecular Ecology. :n/a-n/a.

10.

Gébelin V, Leclercq J, Leclercq J, Argout X, Chaidamsari T, Hu S, Tang C, Sarah G, Yang M, Montoro P. 2013. The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness.. Tree physiology. 33(10):1084-98. Abstract

11.

Dussert S, Guerin C, Andersson M, Joët T, Tranbarger TJ, Pizot M, Sarah G, Omore A, Durand-Gasselin T, Morcillo F. 2013. Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and fatty acid composition.. Plant physiology. 162(3):1337-58. Abstract

12.

Ranwez V, Holtz Y, Sarah G, Ardisson M, Santoni S, Glémin S, Tavaud-Pirra M, David J. 2013. Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat. BMC Bioinformatics. 14(Suppl 15):S15.

13.

Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al.. 2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.