Mathieu Rouard

Institute:

Bioversity International

Public e-mail:

m [dot] rouard [at] cgiar [dot] org

Research Interests:

Musa genomics, Comparative genomics, Gene Discovery, phylogenomics, NGS, RG conservation and use

Species of interest:

Banana

Projects: Banana Genome Hub, Coffee Genome Hub, Gigwa, GNPAnnot, GNPAnnotDB, GreenPhyl, RTB Multi-Genomes Hub

Publication(s):

1.

Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al.. Submitted. {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract

2.

Sempéré G, Larmande P, Rouard M. 2022. Managing high-density genotyping data with Gigwa. Plant Bioinformatics. 2443

3.

Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, de Bellis F, Larmande P. 2019. Gigwa v2—Extended and improved genotype investigator. GigaScience. 8

4.

Baurens F-C, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N et al.. 2019. Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 36:97–111.

5.

Larmande P, Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, De Bellis F, Larmande P. 2019. Gigwa v2—Extended and improved genotype investigator. GigaScience.

6.

Cenci A, Rouard M. 2017. Evolutionary Analyses of GRAS Transcription Factors in Angiosperms. Frontiers in Plant Science. 8:273.

7.

Martin G, Baurens F-C, Droc G, Rouard M, Cenci A, Kilian A, Hastie A, Doleżel J, Aury J-M, Alberti A et al.. 2016. Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods. BMC genomics. 17:243.

8.

Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al.. 2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.

9.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al.. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract

10.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. 2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract

11.

Cenci A, Guignon V, Roux N, Rouard M. 2014. Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.. Plant molecular biology. Abstract

12.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF et al.. 2013. The Banana Genome Hub. Database. 2013 Abstract

13.

D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al.. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract

14.

Guignon V, Droc G, Alaux M, Baurens F-C, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S. 2012. Chado controller: advanced annotation management with a community annotation system.. Bioinformatics (Oxford, England). 28(7):1054-6. Abstract

15.

Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N et al.. 2012. Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers.. Annals of botany. 109(5):937-51. Abstract

16.

Rouard M, Carpentier SC, Bocs S, Droc G, Argout X, Roux N, Ruiz M, Pillay M, Ude G, Kole C et al.. 2012. Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.

17.

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2011. GreenPhylDB v2.0: comparative and functional genomics in plants.. Nucleic acids research. 39(Database issue):D1095-102. Abstract

18.

Baurens F-C, Bocs S, Rouard M, Matsumoto T, Miller RNG, Rodier-Goud M, Mbéguié-A-Mbéguié D, Yahiaoui N. 2010. Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). BMC Plant Biology. 10(1):149.

19.

Rouard M, Guignon V, Aluome C, Laporte M-A, Droc G, Walde C, Zmasek CM, Périn C, Conte MG. 2010. GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Research. Abstract

20.

Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M, Hazekamp T, Takeya M, Doi K, Satoh K, Costa M et al.. 2008. The generation challenge programme platform: semantic standards and workbench for crop science.. International journal of plant genomics. 2008:369601. Abstract

21.

Conte MG, Gaillard S, Lanau N, Rouard M, Périn C. 2008. GreenPhylDB: a database for plant comparative genomics.. Nucleic acids research. 36(Database issue):D991-8. Abstract

22.

Wanchana S, Thongjuea S, Ulat VJ, Anacleto M, Mauleon R, Conte MG, Rouard M, Ruiz M, Krishnamurthy N, Sjolander K et al.. 2008. The Generation Challenge Programme comparative plant stress-responsive gene catalogue. Nucleic Acids Research. 36(suppl 1):D943-D946. Abstract

23.

Argout X, Ruiz M, Rouard M, Turnbull C, Lanaud C, Rosenquist E, Courtois B. 2007. CocoaGen DB: a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases.. 15th International Cocoa Research Conference. 1:515-518.

24.

Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B. 2004. TropGENE-DB, a multi-tropical crop information system.. Nucleic acids research. 32(Database issue):D364-7. Abstract