Jean-François Dufayard

Institute:

CIRAD

Public e-mail:

jean-francois [dot] dufayard [at] cirad [dot] fr

Projects: ARCAD, GreenPhyl

Publication(s):

1.

Fischer I, Diévart A, Droc G, Dufayard JF, Chantret N. 2016. Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms.. Plant physiology. :pp–01470.

2.

Khater F, Balestrino D, Charbonnel N, Dufayard JF, Brisse S, Forestier C. 2015. In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization. PLOS ONE. 10(3):e0116215.

3.

Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. 2015. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research.

4.

Fischer I, Dainat J, Ranwez V, Glémin S, Dufayard JF, Chantret N. 2014. Impact of recurrent gene duplication on adaptation of plant genomes.. BMC plant biology. 14:151. Abstract

5.

Cai J, Liu X, Vanneste K, Proost S, Tsai W-C, Liu K-W, Chen L-J, He Y, Xu Q, Bian C et al.. 2014. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47(1):65-72.

6.

Lariviere D, Dufayard JF, Bocs S, This D. 2014. Integrative System For Gene Family Gathering and Analysis In A Context of Crops’ Stress Response Study. PAG XXII.

7.

Duan C, Argout X, Gébelin V, Summo M, Dufayard JF, Leclercq J, Leclercq J, Piyatrakul P, Pirrello J, Rio M et al.. 2013. Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing.. BMC genomics. 14:30. Abstract

8.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF et al.. 2013. The Banana Genome Hub. Database. 2013 Abstract

9.

Piyatrakul P, Putranto R-A, Martin F, Rio M, Dessailly F, Leclercq J, Dufayard JF, Lardet L, Montoro P. 2012. Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis.. BMC plant biology. 12:244. Abstract

10.

Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al.. 2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.

11.

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M et al.. 2008. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucl. Acids Res.. 36:W465-469. Abstract

12.

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G. 2005. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.. Bioinformatics (Oxford, England). 21(11):2596-603. Abstract