Christine Tranchant
Institute:
IRD
Public e-mail:
christine.tranchant@ird.fr
Species of interest:
Rice
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Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..
Submitted. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
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Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al..
2015. TOGGLE: toolbox for generic NGS analyses. BMC Bioinformatics. 16:374. Abstract
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Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A et al..
2014. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.. Applications in plant sciences. 2 Abstract
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Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al..
2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract
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Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.
2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract
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Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes M-C, Gavory F, de Kochko A, Kudrna D et al..
2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.. Plant molecular biology. 83(3):177-89. Abstract
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Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.
2012. Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.. BMC genomics. 13:103.
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Poncet V, Couderc M, Tranchant-Dubreuil C, Gomez C, Hamon P, Hamon S, Pillon Y, Munzinger J, de Kochko A.
2012. Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia. American Journal of Botany. 99:e411–e414. Abstract
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Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, {De Block} P, Hamon P, Campa C, de Kochko A et al..
2009. MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.. BMC plant biology. 9:123.
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Larmande P, Tranchant-Dubreuil C, Regnier L, Mougenot I, Libourel T.
2006. Integration of Data Sources for Plant Genomics. ICEIS (1). :314-318.