Christine Tranchant

Institute:

IRD

Public e-mail:

christine [dot] tranchant [at] ird [dot] fr

Species of interest:

Rice

Projects: Rice Genome Hub

Publication(s):

1.

Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al.. Submitted. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract

2.

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al.. 2015. TOGGLE: toolbox for generic NGS analyses. BMC Bioinformatics. 16:374. Abstract

3.

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al.. 2015. TOGGLE: Toolbox for generic NGS analyses. JOBIM.

4.

Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A et al.. 2014. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.. Applications in plant sciences. 2 Abstract

5.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al.. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract

6.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. 2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract

7.

Monat C, Tranchant-Dubreuil C, Lorieux M, Ghesquière A, Ruiz M, Sabot F. 2014. African Rices Genome Projects : GLASS and Irigin. PAG XXII. Abstract

8.

Poncet V, Munoz F, Munzinger J, Pillon Y, Gomez C, Couderc M, Tranchant-Dubreuil C, Hamon S, de Kochko A. 2013. Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia.. Molecular ecology. 22:6163–78.

9.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes M-C, Gavory F, de Kochko A, Kudrna D et al.. 2013. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.. Plant molecular biology. 83(3):177-89. Abstract

10.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A. 2012. Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.. BMC genomics. 13:103.

11.

Poncet V, Couderc M, Tranchant-Dubreuil C, Gomez C, Hamon P, Hamon S, Pillon Y, Munzinger J, de Kochko A. 2012. Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia. American Journal of Botany. 99:e411–e414. Abstract

12.

Lin H-C, Morcillo F, Dussert S, Tranchant-Dubreuil C, Tregear JW, Tranbarger TJ. 2009. Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development.. Plant molecular biology. 70:173–92.

13.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, {De Block} P, Hamon P, Campa C, de Kochko A et al.. 2009. MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.. BMC plant biology. 9:123.

14.

Ventelon-Debout M, Tranchant-Dubreuil C, Nguyen T-T-H, Bangratz M, Siré C, Delseny M, Brugidou C. 2008. Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.. BMC plant biology. 8:26.

15.

Larmande P, Tranchant-Dubreuil C, Regnier L, Mougenot I, Libourel T. 2006. Integration of Data Sources for Plant Genomics. ICEIS (1). :314-318.