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2012
Lacape J-M, Claverie M, Vidal RO, Carazzolle MF, Guimarães Pereira GA, Ruiz M, Pré M, Llewellyn D, Al-Ghazi Y, Jacobs J et al..  2012.  Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton.. PloS one. 7(11):e48855. Abstract
Gébelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J.  2012.  Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets.. BMC plant biology. 12:18. Abstract
Cortés AJ, Chavarro CM, Madriñán S, This D, Blair MW.  2012.  Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.).. BMC genetics. 13:58. Abstract
Piyatrakul P, Putranto R-A, Martin F, Rio M, Dessailly F, Leclercq J, Dufayard JF, Lardet L, Montoro P.  2012.  Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis.. BMC plant biology. 12:244. Abstract
Carrier G, Le Cunff L, Dereeper A, Legrand D, Sabot F, Bouchez O, Audeguin L, Boursiquot J-M, This P.  2012.  Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L.. PloS one. 7(3):e32973. Abstract
D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al..  2012.  The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract
Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al..  2012.  Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.
Guignon V, Droc G, Alaux M, Baurens F-C, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S.  2012.  Chado controller: advanced annotation management with a community annotation system.. Bioinformatics (Oxford, England). 28(7):1054-6. Abstract
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N et al..  2012.  Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers.. Annals of botany. 109(5):937-51. Abstract
Blenda A, Fang D, Rami JF, Garsmeur O, Luo F, Lacape JM.  2012.  A High Density Consensus Genetic Map of Tetraploid Cotton That Integrates Multiple Component Maps through Molecular Marker Redundancy Check.
Poncet V, Couderc M, Tranchant-Dubreuil C, Gomez C, Hamon P, Hamon S, Pillon Y, Munzinger J, de Kochko A.  2012.  Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia. American Journal of Botany. 99:e411–e414. Abstract
Cortés AJ, This D, Chavarro C, Madriñán S, Blair MW.  2012.  Nucleotide diversity patterns at the drought-related DREB2 encoding genes in wild and cultivated common bean (Phaseolus vulgaris L.). Theoretical and Applied Genetics. 125:1069-1085.
Rouard M, Carpentier SC, Bocs S, Droc G, Argout X, Roux N, Ruiz M, Pillay M, Ude G, Kole C et al..  2012.  Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.
Wollbrett J, Larmande P, Ruiz M.  2012.  Semi-automatic generation of Semantic Web Services for relational biological databases. CEUR Workshop Proceedings. 952
2011
Leroy T, de Bellis F, Legnate H, Kananura E, Gonzales G, Pereira LF, Andrade AC, Charmetant P, Montagnon C, Cubry P et al..  2011.  Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora. Tree Genetics & Genomes. 7:781-798.
Courtois B, Greco R, Bruschi G, Frouin J, Ahmadi N, Droc G, Hamelin C, Ruiz M, Evrard J-C, Katsantonis D et al..  2011.  Molecular characterization of the European rice collection in view of association mapping. Plant Genetic Resources. 9:233–235.
Negrão S, Courtois B, Ahmadi N, Abreu I, Saibo N, Oliveira MM.  2011.  Recent Updates on Salinity Stress in Rice: From Physiological to Molecular Responses. Critical Reviews in Plant Sciences. 30:329-377.
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..  2011.  Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.. TAG. Theoretical and applied genetics. 123(6):881-95. Abstract
Tranbarger TJ, Dussert S, Joët T, Argout X, Summo M, Champion A, Cros D, Omore A, Nouy B, Morcillo F.  2011.  Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism.. Plant physiology. 156(2):564-84. Abstract
Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann J-C, Van Sluys M-A et al..  2011.  High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane.. The New phytologist. 189(2):629-42. Abstract
Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S et al..  2011.  Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.. PLoS genetics. 7(8):e1002230. Abstract
Dievart A, Gilbert N, Droc G, Attard A, Gourgues M, Guiderdoni E, Périn C.  2011.  Leucine-rich repeat receptor kinases are sporadically distributed in eukaryotic genomes.. BMC evolutionary biology. 11:367. Abstract
Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros J-P, Ruiz M, This P.  2011.  SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.. BMC bioinformatics. 12:134. Abstract
Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al..  2011.  The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..  2011.  Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theoretical and Applied Genetics. 123:881-895.