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2016

Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al.. 2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.

Rienth M, Torregrosa L, Sarah G, Ardisson M, Brillouet J-M, Romieu C. 2016. Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome. BMC Plant Biology. 16:164.

Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, Pereira L, Droc G, Courtois B, Guiderdoni E et al.. 2016. Turning rice meiosis into mitosis. Cell Research.

Ngompé GT, Venkatesan A, El Hassouni N, Ruiz M, Larmande P. 2016. AgroLD API. An API-centric approach towards knowledge extraction in the agronomic linked data knowledge base,AgroLD API. Une architecture orientée services pour l?extraction de connaissances dans la base de données liées AgroLD Ingenierie des Systemes d{'}Information. 21:133-157.

Zevio S, El Hassouni N, Ruiz M, Larmande P. 2016. AgroLD indexing tools with ontological annotations. CEUR Workshop Proceedings. 1795

Pommier C, Jonquet C, Toulet A, Emonet V, Dzalé-Yeumo E, Laporte M-A, Arnaud E, Larmande P. 2016. AgroPortal : a proposition for ontology-based services in the agronomic domain.

Larmande P, Chentli I, Larmande P, Todorov K. 2016. Construction d{'}un gold standard pour les données agronomiques. Unpublished.

Luyen LN, Tireau A, Venkatesan A, Neveu P, Larmande P. 2016. Development of a knowledge system for big data: Case study to plant phenotyping data. ACM International Conference Proceeding Series. 13-15-June-2016

Pommier C, Kabore DYE, Arnaud E, Larmande P, Alaux M, Quesneville H. 2016. Feedback from the RDA and WheatIS recommendations for wheat data interoperability.

Larmande P, G S, F P, A D, M R, G S, P L. 2016. Gigwa-Genotype investigator for genome-wide analyses..

Larmande P, Chentli I, Larmande P, Todorov K. 2016. Gold standard construction for the agronomic data. F1000Research.

Larmande P, Hyzorek DR, Mirouze M, Larmande P. 2016. Integration and Visualization of Epigenome and Mobilome Data in Crops. Unpublished.

Jonquet C, Toulet A, Arnaud E, Aubin S, Yeumo ED, Emonet V, Graybeal J, Musen MA, Pommier C, Larmande P. 2016. Reusing the NCBO BioPortal technology for agronomy to build AgroPortal. CEUR Workshop Proceedings. 1747

Larmande P, Yeumo ED, Fulss R, Alaux M, Aubin S, Arnaud E, Baumann U, Cooper L, Davey R, Laporte M-A et al.. 2016. Wheat Data Interoperability Guidelines, Ontologies and User Cases. Research Data Alliance.

2015

Khater F, Balestrino D, Charbonnel N, Dufayard JF, Brisse S, Forestier C. 2015. In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization. PLOS ONE. 10(3):e0116215.

Lartaud M, Perin C, Courtois B, Thomas E, Henry S, Bettembourg M, Divol F, Lanau N, Artus F, Bureau C et al.. 2015. PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification. Frontiers in Plant Science. 5

Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, Dufayard JF, Ruiz M. 2015. SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research.

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al.. 2015. TOGGLE: Toolbox for generic NGS analyses. JOBIM.

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al.. 2015. TOGGLE: toolbox for generic NGS analyses. BMC Bioinformatics. 16:374. Abstract

Doucet AJ, Droc G, Siol O, Audoux J, Gilbert N. 2015. U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals. Molecular Biology and Evolution.

Venkatesan A, El Hassouni N, Phillipe F, Pommier C, Quesneville H, Ruiz M, Larmande P. 2015. Exposing French agronomic resources as Linked Open Data. CEUR Workshop Proceedings. 1546:205-207.

G. S, F. P, A. D, M. R, G. S, P. L. 2015. Gigwa: Genotype Inves1gator for Genome Wide Analyses Variant search interface.

Arnaud E, P. A, X. S, L. C, P. J, C. P, P. L, M. R. 2015. Interoperability and Interpretation of Phenotyping Data Use of Plant Domain Ontologies ".

Venkatesan A, El Hassouni N, Phillipe F, Pommier C, Quesneville H, Ruiz M, Larmande P. 2015. Towards efficient data integration and knowledge management in the Agronomic domain.

2014

Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A et al.. 2014. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.. Applications in plant sciences. 2 Abstract