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2013
Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes M-C, Gavory F, de Kochko A, Kudrna D et al..  2013.  BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.. Plant molecular biology. 83(3):177-89. Abstract
Courtois B, Audebert A, Dardou A, Roques S, Ghneim-Herrera T, Droc G, Frouin J, Rouan L, Gozé E, Kilian A et al..  2013.  Genome-wide association mapping of root traits in a japonica rice panel.. PloS one. 8(11):e78037. Abstract
Pérez-Quintero AL, Rodriguez-R LM, Dereeper A, López C, Koebnik R, Szurek B, Cunnac S.  2013.  An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains.. PloS one. 8(7):e68464. Abstract
2012
Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.  2012.  Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.. BMC genomics. 13:103.
Courtois B, Frouin J, Greco R, Bruschi G, Droc G, Hamelin C, Ruiz M, Clément G, Evrard J-C, Van Coppenole S et al..  2012.  Genetic Diversity and Population Structure in a European Collection of Rice. Crop Sci.. 52(4):1663-1675. Abstract
D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al..  2012.  The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N et al..  2012.  Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers.. Annals of botany. 109(5):937-51. Abstract
Poncet V, Couderc M, Tranchant-Dubreuil C, Gomez C, Hamon P, Hamon S, Pillon Y, Munzinger J, de Kochko A.  2012.  Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia. American Journal of Botany. 99:e411–e414. Abstract
Rouard M, Carpentier SC, Bocs S, Droc G, Argout X, Roux N, Ruiz M, Pillay M, Ude G, Kole C et al..  2012.  Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.
2011
Leroy T, de Bellis F, Legnate H, Kananura E, Gonzales G, Pereira LF, Andrade AC, Charmetant P, Montagnon C, Cubry P et al..  2011.  Improving the quality of African robustas: QTLs for yield- and quality-related traits in Coffea canephora. Tree Genetics & Genomes. 7:781-798.
Courtois B, Greco R, Bruschi G, Frouin J, Ahmadi N, Droc G, Hamelin C, Ruiz M, Evrard J-C, Katsantonis D et al..  2011.  Molecular characterization of the European rice collection in view of association mapping. Plant Genetic Resources. 9:233–235.
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..  2011.  Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.. TAG. Theoretical and applied genetics. 123(6):881-95. Abstract
Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S et al..  2011.  Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.. PLoS genetics. 7(8):e1002230. Abstract
Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al..  2011.  The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..  2011.  Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theoretical and Applied Genetics. 123:881-895.
2010
Hippolyte I, Bakry F, Seguin M, Gardes L, Rivallan R, Risterucci AM, Jenny C, Perrier X, Carreel F, Argout X et al..  2010.  A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananas. BMC Plant Biology. 10(1):65.
2009
Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, {De Block} P, Hamon P, Campa C, de Kochko A et al..  2009.  MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.. BMC plant biology. 9:123.
Courtois B, Ahmadi N, Khowaja F, Price AH, Rami JF, Frouin J, Hamelin C, Ruiz M.  2009.  Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database. Rice. 2(2-3):115-128.
Riedel M, Riederer M, Becker D, Herran A, Kullaya A, Arana-López G, Peña-Rodríguez L, Billotte N, Sniady V, Rohde W et al..  2009.  Cuticular wax composition in Cocos nucifera L.: physicochemical analysis of wax components and mapping of their QTLs onto the coconut molecular linkage map. Tree Genetics & Genomes. 5:53-69.
Nayak SN, Balaji J, Upadhyaya HD, Hash TC, Kishor KPB, Chattopadhyay D, Rodriquez LM, Blair MW, Baum M, McNally K et al..  2009.  Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Science. 177:460-467.
2008
Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Loor G, Cascardo J et al..  2008.  A First Step In The Understanding Of The Cocoa Transcriptome: Analysis Of An Exhaustive Dataset Of ESTs On Theobroma cacao Generated From Various Tissues And Under Various Conditions.. Plant & Animal Genomes XVI Conference.
Lanaud C, Argout X, Fouet O, Allegre M, Bocs S, Ruiz M, Kudrna D, Jetty SSA, Wing R, Clément D et al..  2008.  The International Cocoa Genome Sequencing Consortium (ICGS). Plant Genomics European Meeting (PlantGEM).
von Korff M, Grando S, Del Greco A, This D, Baum M, Ceccarelli S.  2008.  Quantitative trait loci associated with adaptation to Mediterranean dryland conditions in barley.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 117(5):653-69. Abstract
Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A et al..  2008.  "Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.. Journal of bacteriology. 190(7):2572-9. Abstract
Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M, Hazekamp T, Takeya M, Doi K, Satoh K, Costa M et al..  2008.  The generation challenge programme platform: semantic standards and workbench for crop science.. International journal of plant genomics. 2008:369601. Abstract