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Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al..  2014.  The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract
Déon M, Bourré Y, Gimenez S, Berger A, Bieysse D, de Lamotte F, Poncet J, Roussel V, Bonnot F, Oliver G et al..  2012.  Characterization of a cassiicolin-encoding gene from Corynespora cassiicola, pathogen of rubber tree (Hevea brasiliensis).. Plant science : an international journal of experimental plant biology. 185-186:227-37. Abstract
Dereeper A, Audic S, Claverie J-M, Blanc G.  2010.  BLAST-EXPLORER helps you building datasets for phylogenetic analysis.. BMC evolutionary biology. 10:8. Abstract
Dereeper A, Nicolas S, Le Cunff L, Bacilieri R, Doligez A, Peros J-P, Ruiz M, This P.  2011.  SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects.. BMC bioinformatics. 12:134. Abstract
Dereeper A, Homa F, Andres G, Sempéré G, Sarah G, Hueber Y, Dufayard JF, Ruiz M.  2015.  SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research.
Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes M-C, Gavory F, de Kochko A, Kudrna D et al..  2013.  BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.. Plant molecular biology. 83(3):177-89. Abstract
Dereeper A, Argout X, Billot C, Rami JF, Ruiz M.  2007.  SAT, a flexible and optimized Web application for SSR marker development. BMC Bioinformatics. 8:465-465. Abstract
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M et al..  2008.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucl. Acids Res.. 36:W465-469. Abstract
Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.  2014.  The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract
Dievart A, Gilbert N, Droc G, Attard A, Gourgues M, Guiderdoni E, Périn C.  2011.  Leucine-rich repeat receptor kinases are sporadically distributed in eukaryotic genomes.. BMC evolutionary biology. 11:367. Abstract
Do H, Than K, Larmande P.  Submitted.  Evaluating Named-Entity Recognition Approaches in Plant Molecular Biology. Multi-disciplinary Trends in Artificial Intelligence. :219–225. Abstract
Do QH, Bich HH, Larmande P.  2020.  {PyRice}: a Python package for querying Oryza Sativa databases.
Do H, Tran H, Khoat Than Q, Larmande P.  Submitted.  Comparative study of Named-Entity Recognition methods in the agronomical domain. {CiCling}. Abstract
Do Q, Larmande P.  2020.  Candidate gene prioritization using graph embedding.
Do Q, Hai HB, Larmande P.  Submitted.  {PyRice}: a Python package for querying Oryza Sativa databases.
Do H, Than K, Larmande P.  2018.  Evaluating Named-Entity Recognition approaches in plant molecular biology.
Do Q, Hai HB, Larmande P.  2020.  {PyRice}: a Python package for querying Oryza Sativa databases. Bioinformatics.
Doucet AJ, Droc G, Siol O, Audoux J, Gilbert N.  2015.  U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals. Molecular Biology and Evolution.
Droc G.  2006.  {OryGenesDB}: a database for rice reverse genetics. Nucleic Acids Research. 34:D736–D740.
Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF et al..  2013.  The Banana Genome Hub. Database. 2013 Abstract
Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C.  2011.  Insertions within Os01g09550.
Droc G, Périn C, Fromentin S, Larmande P.  2009.  OryGenesDB 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Research. 37(Database i):D992-5-D992-5. Abstract
Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C.  2006.  OryGenesDB: a database for rice reverse genetics.. Nucleic acids research.. 34
Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel JB, Dievart A, Courtois B, Guiderdoni E, Périn C.  2011.  Insertions within Os01g09550.
Droc G, Ruiz M, Larmande P, Pereira A, Piffanelli P, Morel J-B, Dievart A, Courtois B, Guiderdoni E, Périn C.  2006.  OryGenesDB: a database for rice reverse genetics. Nucleic Acids Research. 34(Database i):D736-40-D736-40. Abstract