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Gigwa v2.8 is out!

You may download Gigwa bundle or webapp from GitHub release page
 
Changes in v2.8:
  • Changes on BrAPI V2 web services:
  - search/germplasm:
    - fix to return external germplasmDbId into externalReferences
    - return external germplasmName as Gigwa germplasmName if the germplasm was imported from another BrAPI endpoint
    - filter on germplasmNames : look also in external germplasmNames (available for germplasm imported from BrAPI endpoint)
  - search/samples:
    - fix to return external sampleDbId into externalReferences
    - return external sampleName as Gigwa sampleName if the sample was imported from another BrAPI endpoint
    - filter on sampleNames : look also in external sampleNames (available for samples imported from BrAPI endpoint)
  - search/calls & search/allematrix:
    - fix on pagination
    - fix on filtering on variantSets
  - search/callsets:
    - return external sampleDbId into externalReferences if the germplasm was imported from another BrAPI endpoint
    - return external sampleName as Gigwa sampleName if the sample was imported from another BrAPI endpoint
    - in swagger doc, hide filters that are not managed yet
  • Quick stats on variant details popup
     
  • Ability to pull sample/individual metadata from BrAPI while importing genotypes
     
  • Added support for importing DArTseq files
     
  • Added MAF distribution chart
     
  • Added "maxQueryThreads_HOST" configuration parameter allowing to tune allocation of MongoDB server resources
     
  • Added support for editing genotypes with SnpClust (based on scatter plots of fluorescence values) via the "snpclustLink" configuration parameter
     
  • Added "enableExperimentalFeatures" configuration parameter
     
  • Implemented Jukes-Cantor neighbour-joining Newick tree export as experimental feature
     
  • Re-added means to paste gene name list
     
  • Provided means to name individual groups
     
  • Added taxon selection dropdown to filter DBs from the navigation bar
     
  • Simplified selection of individuals for charts, gave more flexibility in Fst group design
     
  • Provided means to copy chart's X-avis range to clipboard from hamburger menu (may be pasted at once into any of the position filter fields in the main search interface)
     
  • Various bugfixes