Gigwa v2.6 is now out!
You may download Gigwa bundle or webapp from the project homepage
Changes in v2.6:
- Improved filtering: MAF, missing data and heterozygosity percentages may now be applied by range
- New export functionalities for converting SNP genotypes into pseudo-alignments ready for tree construction (supported formats: NEXUS, PHYLIP, FASTA)
- Added means for any user to push exported data into Galaxy libraries (for any Galaxy instance the user has an account on)
- Import interface refactored to allow providing metadata along with genotypes (single-shot). Now attempts pulling BrAPI metadata as soon as extRefId and extRefSrc values are found (no more need to get back to the import interface and submit again)
- Added support for sample metadata (only accessible via BrAPI)
- Implemented the following BrAPI v2.1 calls: GET /allelematrix, POST /search/allelematrix, PUT /calls
- Importing genotypes via BrAPI v1 now prompts for token rather than doing unsecure authentication
- Improved support for online output tools, allowing to finely define URLs (in config.properties) for pushing each type of exported file according to its extension
- Added support for allowedOrigins parameter in config.properties, providing sysadmin means to precisely define CORS-policy based on URL patterns (convenient for securing REST API usage)
- Allowed to override config.properties values with environment variables by prefixing their name with "GIGWA." (particularly useful when using the Docker version)
- Various bugfixes
