Bibliography
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Droc G, Perin C, Fromentin S, Larmande P.
2009. {OryGenesDB} 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Research. 37:D992–D995.
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Larmande P, Yeumo ED, Fulss R, Alaux M, Aubin S, Arnaud E, Baumann U, Cooper L, Davey R, Laporte M-A et al..
2016. Wheat Data Interoperability Guidelines, Ontologies and User Cases. Research Data Alliance.
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Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M et al..
2015. TOGGLE: toolbox for generic NGS analyses. BMC Bioinformatics. 16:374. Abstract
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..
2011. Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theoretical and Applied Genetics. 123:881-895.
Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al..
2011. Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.. TAG. Theoretical and applied genetics. 123(6):881-95. Abstract
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Larmande P, Adrien P, Fabien DB, Guilhem S, Julien F, Mathieu R, Pierre L, Yann H.
2019. Supporting data for {"}Gigwa v2 – Extended and improved genotype investigator{"}. GigaScience Database.
Souza GM, Berges H, Bocs S, Casu R, D’Hont A, Ferreira JE, Henry R, Ming R, Potier B, Van Sluys M-A et al..
2011. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology. 4:145-156.
Philippe R, Courtois B, McNally KL, Mournet P, El-Malki R, Le Paslier MC, Fabre D, Billot C, Brunel D, Glaszmann J-C et al..
2010. Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives.. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 121(4):769-87. Abstract
Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al..
2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.
Wu AG, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J et al..
2014. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology.
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..
2017. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 75:284-298.
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Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al..
2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.
Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..
Submitted. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
Courtois B, Ahmadi N, Khowaja F, Price AH, Rami JF, Frouin J, Hamelin C, Ruiz M.
2009. Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database. Rice. 2(2-3):115-128.
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Larmande P, Droc G, Fromentin S, Périn C.
2009. Orylink: A Personalized Integrated System for Functional Genomic Analysis. International Plant and Animal Genome Conference.
Droc G, Périn C, Fromentin S, Larmande P.
2009. OryGenesDB 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Research. 37(Database i):D992-5-D992-5. Abstract
Luquet D, Clément-Vidal A, Fabre D, This D, Sonderegger N, Dingkuhn M.
2008. Orchestration of transpiration, growth and carbohydrate dynamics in rice during a dry-down cycle. Functional Plant Biology. 35(8):689-704. Abstract
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Pugh T, Fouet O, Risterucci AM, Brottier P, Abouladze M, Deletrez C, Courtois B, Clement D, Larmande P, N’Goran JAK et al..
2004. A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 108(6):1151-61. Abstract
Pugh T, Fouet O, Risterucci AM, Brottier P, Abouladze M, Deletrez C, Courtois B, Clement D, Larmande P, N'Goran JAK et al..
2004. A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. Theor Appl Genet. 108:1151–1161.
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Courtois B, Greco R, Bruschi G, Frouin J, Ahmadi N, Droc G, Hamelin C, Ruiz M, Evrard J-C, Katsantonis D et al..
2011. Molecular characterization of the European rice collection in view of association mapping. Plant Genetic Resources. 9:233–235.