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Submitted
Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  Submitted.  Agronomic Linked Data ({AgroLD}): A knowledge-based system to enable integrative biology in agronomy. 13:1–17. Abstract
Larmande P, Chentli I, Larmande P, Todorov K.  Submitted.  Construction d'un gold standard pour les données agronomiques.
Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al..  Submitted.  Developing data interoperability using standards: A wheat community use case. 6:1843.
Scheben A, Chan C-KK, Mansueto L, Mauleon R, Larmande P, Alexandrov N, Wing RA, {McNally} KL, Quesneville H, Edwards D.  Submitted.  Progress in single-access information systems for wheat and rice crop improvement. Abstract
Cubry P, Tranchant-Dubreuil C, Thuillet A-C, Monat C, Ndjiondjop M-N, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B et al..  Submitted.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes. 28:2274–2282.e6. Abstract
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  Submitted.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. 75:284–298. Abstract
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C et al..  Submitted.  {AgBioData} consortium recommendations for sustainable genomics and genetics databases for agriculture. 2018 Abstract
Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al..  Submitted.  {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract
2020
Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, Perrier X, Glaszmann J-C, D'Hont A, Yahiaoui N.  2020.  Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal.
2018
Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  2018.  Agronomic Linked Data ({AgroLD}): a Knowledge-based System to Enable Integrative Biology in Agronomy.
Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C et al..  2018.  A mosaic monoploid reference sequence for the highly complex genome of sugarcane.. Nature communications. 9(1):2638. Abstract
P C, C T-D, AC T, C M, MN N, K L, C C, S E, N S, B R et al..  2018.  The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.. Current biology : CB.
A S, CK C, L M, R M, P L, N A, RA W, KL MN, H Q, D E.  2018.  Progress in single-access information systems for wheat and rice crop improvement.. Briefings in bioinformatics.
L H, J C, EKS C, S J, M P, R W, C A, E A, TZ B, C B et al..  2018.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation.
Larmande P, Venkatesan A, Zhang L, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, Ruiz M, Larmande P.  2018.  Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLOS ONE.
2017
Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA et al..  2017.  Developing data interoperability using standards: A wheat community use case. F1000Research. 6:1843.
Ruas M, Guignon V, Sempere G, Sardos J, Hueber Y, Duvergey H, Andrieu A, Chase R, Jenny C, Hazekamp T et al..  2017.  MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database. 2017(1)
Cenci A, Rouard M.  2017.  Evolutionary Analyses of GRAS Transcription Factors in Angiosperms. Frontiers in Plant Science. 8:273.
Larmande P, Yeumo ED, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP et al..  2017.  Developing data interoperability using standards: A wheat community use case [version 2; referees: 2 approved].
Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, Hinsen K, Larmande P, Bras YL, Lemoine F et al..  2017.  Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 75:284-298.
2016
Sarah G, Homa F, Pointet S, Contreras S, Sabot F, Nabholz B, Santoni S, Sauné L, Ardisson M, Chantret N et al..  2016.  A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.. Molecular ecology resources. Abstract
Fischer I, Diévart A, Droc G, Dufayard JF, Chantret N.  2016.  Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms.. Plant physiology. :pp–01470.
Clément Y, Sarah G, Holtz Y, Homa F, Pointet S, Contreras S, Nabholz B, Sabot F, Sauné L, Ardisson M et al..  2016.  Evolutionary forces affecting synonymous variations in plant genomes. bioRxiv. :086231.
Martin G, Baurens F-C, Droc G, Rouard M, Cenci A, Kilian A, Hastie A, Doleżel J, Aury J-M, Alberti A et al..  2016.  Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods. BMC genomics. 17:243.
Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al..  2016.  The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.