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A

A S, CK C, L M, R M, P L, N A, RA W, KL MN, H Q, D E. 2018. Progress in single-access information systems for wheat and rice crop improvement.. Briefings in bioinformatics.

A S, {CK} C, L M, R M, P L, N A, {RA} W, {KL} {MN}, H Q, D E. Submitted. Progress in single-access information systems for wheat and rice crop improvement..

Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, Robbins K, Selby P, Glaser P, Sun Q et al.. Submitted. {BrAPI} - an Application Programming Interface for Plant Breeding Applications. Abstract

Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A et al.. 2014. In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.. Applications in plant sciences. 2 Abstract

Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al.. 2011. Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theoretical and Applied Genetics. 123:881-895.

Ahmadi N, Negrão S, Katsantonis D, Frouin J, Ploux J, Letourmy P, Droc G, Babo P, Trindade H, Bruschi G et al.. 2011. Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.. TAG. Theoretical and applied genetics. 123(6):881-95. Abstract

AL-Tam F, Adam H, Anjos A, Lorieux M, Larmande P, Ghesquière A, Jouannic S, Shahbazkia H. 2013. P-{TRAP}: a Panicle Trait Phenotyping tool. {BMC} Plant Biol. 13:122.

Amselem J, Cuomo CA, van Kan JAL, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S et al.. 2011. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.. PLoS genetics. 7(8):e1002230. Abstract

Argout X, Ruiz M, Fouet O, Lanaud C, Wincker P, Da Silva C, Courtois B. 2007. ESTtik : a semi-automatic cDNA sequence analysis and annotation pipeline including SSR and SNP search tools.. 15th International Cocoa Research Conference. 1:501-506.

Argout X, Martin G, Droc G, Fouet O, Labadie K, Rivals E, Aury JM, Lanaud C. 2017. The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.. BMC genomics. 18(1):730. Abstract

Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al.. 2011. The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Loor G, Cascardo J et al.. 2008. A First Step In The Understanding Of The Cocoa Transcriptome: Analysis Of An Exhaustive Dataset Of ESTs On Theobroma cacao Generated From Various Tissues And Under Various Conditions.. Plant & Animal Genomes XVI Conference.

Argout X, Ruiz M, Rouard M, Turnbull C, Lanaud C, Rosenquist E, Courtois B. 2007. CocoaGen DB: a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases.. 15th International Cocoa Research Conference. 1:515-518.

Arnaud E, P. A, X. S, L. C, P. J, C. P, P. L, M. R. 2015. Interoperability and Interpretation of Phenotyping Data Use of Plant Domain Ontologies ".

B

B G, NQ H, D P, A B, K C, P T, P L, A D. 2020. COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City.. Frontiers in public health.

B G, {NQ} H, D P, A B, K C, P T, P L, A D. Submitted. {COMOKIT}: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the {COVID}-19 Epidemic at the Scale of a City..

Ballini E, Morel J-B, Droc G, Price A, Courtois B, Jean-Loup, Tharreau D. 2008. A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Molecular Plant-Microbe Interactions: MPMI. 21:859–68. Abstract

Baurens F-C, Bocs S, Rouard M, Matsumoto T, Miller RNG, Rodier-Goud M, Mbéguié-A-Mbéguié D, Yahiaoui N. 2010. Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). BMC Plant Biology. 10(1):149.

Baurens F-C, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, Rouard M, Habas R, Lemainque A, Yahiaoui N et al.. 2019. Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 36:97–111.

Blenda A, Fang D, Rami JF, Garsmeur O, Luo F, Lacape JM. 2012. A High Density Consensus Genetic Map of Tetraploid Cotton That Integrates Multiple Component Maps through Molecular Marker Redundancy Check.

Bocs S, Dereeper A, Gayraud T, Jamilloux V, Lashermes P, Guyot R. 2014. Transposable Elements in the Robusta Coffee Genome (Coffea canephora). PAG XXII.

Bruskiewich R, Senger M, Davenport G, Ruiz M, Rouard M, Hazekamp T, Takeya M, Doi K, Satoh K, Costa M et al.. 2008. The generation challenge programme platform: semantic standards and workbench for crop science.. International journal of plant genomics. 2008:369601. Abstract

C

Cai J, Liu X, Vanneste K, Proost S, Tsai W-C, Liu K-W, Chen L-J, He Y, Xu Q, Bian C et al.. 2014. The genome sequence of the orchid Phalaenopsis equestris. Nature Genetics. 47(1):65-72.

Carrier G, Le Cunff L, Dereeper A, Legrand D, Sabot F, Bouchez O, Audeguin L, Boursiquot J-M, This P. 2012. Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L.. PloS one. 7(3):e32973. Abstract

Cenci A, Guignon V, Roux N, Rouard M. 2014. Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.. Plant molecular biology. Abstract