Gaëtan Droc
Institute:
CIRAD
Public e-mail:
gaetan [dot] droc [at] cirad [dot] fr 
Research Interests:
Data mining, Interoperability, Functional & Comparative Genomics
1.
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2016. Turning rice meiosis into mitosis. Cell Research.
2.
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2016. Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods. BMC genomics. 17:243.
3.
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2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.
4.
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2015. U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals. Molecular Biology and Evolution.
5.
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2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract
6.
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2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract
8.
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2013. ASL/LBD phylogeny suggests that genetic mechanisms of root initiation downstream of auxin are distinct in lycophytes and euphyllophytes.. Molecular biology and evolution. 30(3):569-72. Abstract
9.
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2013. International Consortium of Rice Mutagenesis: resources and beyond.. Rice (New York, N.Y.). 6(1):39. Abstract
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2013. Genome-wide association mapping of root traits in a japonica rice panel.. PloS one. 8(11):e78037. Abstract
11.
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2013. Reverse genetics in rice using Tos17.. Methods in molecular biology (Clifton, N.J.). 1057:205-21. Abstract
12.
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2013. Mutant Resources for Functional Analysis of the Rice Genome. Genetics and Genomics of Rice. 5:81-115.
13.
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2013. The Banana Genome Hub. Database. 2013 Abstract
14.
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2012. Genetic Diversity and Population Structure in a European Collection of Rice. Crop Sci.. 52(4):1663-1675. Abstract
15.
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2012. In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.. Plant biotechnology journal. 10(5):555-68. Abstract
16.
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2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract
17.
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2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.
18.
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2012. Chado controller: advanced annotation management with a community annotation system.. Bioinformatics (Oxford, England). 28(7):1054-6. Abstract
19.
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2012. Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.
20.
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2011. Molecular characterization of the European rice collection in view of association mapping. Plant Genetic Resources. 9:233–235.
21.
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2011. Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.. TAG. Theoretical and applied genetics. 123(6):881-95. Abstract
22.
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2011. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane.. The New phytologist. 189(2):629-42. Abstract
23.
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2011. Leucine-rich repeat receptor kinases are sporadically distributed in eukaryotic genomes.. BMC evolutionary biology. 11:367. Abstract
24.
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2011. The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.
25.
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2011. Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra. Theoretical and Applied Genetics. 123:881-895.
26.
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2011. GreenPhylDB v2.0: comparative and functional genomics in plants.. Nucleic acids research. 39(Database issue):D1095-102. Abstract
27.
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2010. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist. 189(2):629-642.
28.
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2010. GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Research. Abstract
29.
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2009. OryGenesDB 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Research. 37(Database i):D992-5-D992-5. Abstract
30.
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2009. Orylink: A Personalized Integrated System for Functional Genomic Analysis. International Plant and Animal Genome Conference.
31.
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2009. Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus. Molecular Genetics and Genomics. 282(6):633-652.
32.
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2008. ARCHIPELAGO: a dedicated resource for exploiting past, present, and future genomic data on disease resistance regulation in rice. Molecular Plant-Microbe Interactions: MPMI. 21(7):869-78. Abstract
33.
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2008. Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library.. Nucleic acids research. 36(Database issue):D1022-7. Abstract
34.
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2008. Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.. BMC genomics. 9:183. Abstract
35.
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2008. A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance. Molecular Plant-Microbe Interactions: MPMI. 21:859–68. Abstract
36.
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2007. Large-scale characterization of Tos17 insertion sites in a rice T-DNA mutant library. Plant Mol Biol. Abstract
37.
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2007. Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus. The New phytologist. 174(1):159-71. Abstract
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2006. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Research. 34(Database i):D736-40-D736-40. Abstract
39.
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2005. EU-OSTID: a collection of transposon insertional mutants for functional genomics in rice. Plant molecular biology. 59(1):99-110. Abstract
40.
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2004. High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. The Plant journal : for cell and molecular biology. 39(3):450-64. Abstract
