Stéphanie Bocs

Institute:

CIRAD

Public e-mail:

stephanie [dot] sidibe-bocs [at] cirad [dot] fr

Research Interests:

Sequence Analysis, Plant Genome Annotation, Comparative Genomics, Information System & Interoperability

Species of interest:

Banana, Cocoa, Coffee, Sugarcane

Projects: Banana Genome Hub, BFF, Chado Controller, Coffee Genome Hub, GNPAnnot

Publication(s):

1.

Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, Droc G, Dufayard JF, El Hassouni N, Farcy C et al.. 2016. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 7:6–9.

2.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G et al.. 2014. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.. Science (New York, N.Y.). 345(6201):1181-4. Abstract

3.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G. 2014. The coffee genome hub: a resource for coffee genomes.. Nucleic acids research. Abstract

4.

Jourda C, Cardi C, Mbéguié-A-Mbéguié D, Bocs S, Garsmeur O, D'Hont A, Yahiaoui N. 2014. Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications.. The New phytologist. 202(3):986-1000. Abstract

5.

Bocs S, Dereeper A, Gayraud T, Jamilloux V, Lashermes P, Guyot R. 2014. Transposable Elements in the Robusta Coffee Genome (Coffea canephora). PAG XXII.

6.

Lariviere D, Dufayard JF, Bocs S, This D. 2014. Integrative System For Gene Family Gathering and Analysis In A Context of Crops’ Stress Response Study. PAG XXII.

7.

Chabannes M, Baurens F-C, Duroy P-O, Bocs S, Vernerey M-S, Rodier-Goud M, Barbe V, Gayral P, Iskra-Caruana M-L. 2013. Three infectious viral species lying in wait in the banana genome.. Journal of virology. 87(15):8624-37. Abstract

8.

Droc G, Larivière D, Guignon V, Yahiaoui N, This D, Garsmeur O, Dereeper A, Hamelin C, Argout X, Dufayard JF et al.. 2013. The Banana Genome Hub. Database. 2013 Abstract

9.

D’Hont A, Denoeud F, Aury J-M, Baurens F-C, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M et al.. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature. 488(7410):213-7. Abstract

10.

Maillol V, Bacilieri R, Bocs S, Boursiquot J-M, Carrier G, Dereeper A, Droc G, Fleury C, Larmande P, Lecunff L et al.. 2012. Role of Galaxy in a bioinformatic plant breeding platform. Galaxy Community Conference.

11.

Guignon V, Droc G, Alaux M, Baurens F-C, Garsmeur O, Poiron C, Carver T, Rouard M, Bocs S. 2012. Chado controller: advanced annotation management with a community annotation system.. Bioinformatics (Oxford, England). 28(7):1054-6. Abstract

12.

Rouard M, Carpentier SC, Bocs S, Droc G, Argout X, Roux N, Ruiz M, Pillay M, Ude G, Kole C et al.. 2012. Role of bioinformatics as a tool. Genetics, Genomics, and Breeding of Bananas. :194.

13.

Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann J-C, Van Sluys M-A et al.. 2011. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane.. The New phytologist. 189(2):629-42. Abstract

14.

Argout X, Salse J, Aury J-M, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN et al.. 2011. The genome of Theobroma cacao. Nature Genetics. 43(2):101-108.

15.

Souza GM, Berges H, Bocs S, Casu R, D’Hont A, Ferreira JE, Henry R, Ming R, Potier B, Van Sluys M-A et al.. 2011. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology. 4:145-156.

16.

Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann JC, Van Sluys M-A et al.. 2010. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist. 189(2):629-642.

17.

Baurens F-C, Bocs S, Rouard M, Matsumoto T, Miller RNG, Rodier-Goud M, Mbéguié-A-Mbéguié D, Yahiaoui N. 2010. Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana). BMC Plant Biology. 10(1):149.

18.

Mbéguié-A-Mbéguié D, Hubert O, Baurens F-C, Matsumoto T, Chillet M, Fils-Lycaon B, Bocs S. 2009. Expression patterns of cell wall-modifying genes from banana during fruit ripening and in relationship with finger drop. J. Exp. Bot.. 60:2021–2034.

19.

Lanaud C, Argout X, Fouet O, Allegre M, Bocs S, Ruiz M, Kudrna D, Jetty SSA, Wing R, Clément D et al.. 2008. The International Cocoa Genome Sequencing Consortium (ICGS). Plant Genomics European Meeting (PlantGEM).

20.

Pelletier E, Kreimeyer A, Bocs S, Rouy Z, Gyapay G, Chouari R, Rivière D, Ganesan A, Daegelen P, Sghir A et al.. 2008. "Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division.. Journal of bacteriology. 190(7):2572-9. Abstract