RAP-Green 


RAP-Green search for term

RAP is a tree reconciliation software, which permits to find gene duplications in phylogenetic trees, in order to improve gene function inferences. The algorithm is applicable to realistic data, especially n-ary species tree and unrooted phylogenetic tree. The algorithm also takes branch lengths into account. RAP-Green is a revamped version, adapted to plants, and able to provide confidence scores for orthology relationships, from a functional point of vue. (Dufayard 2011)