Trainings in Hanoi Vietnam: NGS analyses using Galaxy (nov 2015)

Monday 9th November:

General Introduction

• 9.00 am to 12.00 am : Theoretical aspects of NGS methodologies

Course

François Sabot.

• 1.30 pm to 5.00 pm : From Genome to Proteins: general concepts

Course

François Sabot.

Tuesday 10th November:

Introduction to Galaxy

• 9.00 am to 12.00 am : Introduction to Galaxy

"From raw data to SNPs" : course

"From raw data to SNPs": practical exercises part 1

François Sabot, Gautier Sarah, Alexis Dereeper

• 1.30 pm to 5.00 pm : Quality control - Cleaning - Mapping

François Sabot, Gautier Sarah, Alexis Dereeper

Wednesday 11th November:

Galaxy and workflows

• 9.00 am to 12.00 am : Mapping visualization 

François Sabot, Gautier Sarah, Alexis Dereeper

• 1.30 pm to 5.00 pm : SNP calling and filtering

François Sabot, Gautier Sarah, Alexis Dereeper

Thursday 12th November:

SNiPlay web application

• 9.00 am to 12.00 am : Analysis of SNPs derived from RNA-Seq

Course

Practical exercises

François Sabot, Gautier Sarah, Alexis Dereeper

• 1.30 pm to 5.00 pm : GBS data and Genome Wide Association Studies (GWAS)

Support de cours (Y Hueber)

François Sabot, Gautier Sarah, Alexis Dereeper

Friday 13th November

Galaxy and metagenomics

• 9.00 am to 12.00 am : Introduction to metagenomics

Course

Practical exercises

François Sabot, Gautier Sarah, Alexis Dereeper

• 1.30 pm to 5.00 pm : Open discussions on local projects

François Sabot, Gautier Sarah, Alexis Dereeper

• Alexis Dereeper (IE IRD). 

• François Sabot (CR IRD). 

• Gautier Sarah (IE INRA).