The Agronomic Linked Data knowledge graph database for plant molecular data
Pierre Larmande

IBC - Institut de Biologie Computationnelle

IFB - Institut Francais de Bioinformatique

Cassava Genome Hub

the integrated portal for cassava
Manuel Ruiz, Alexis Dereeper

Agropolis Fondation (Twin post-doc)


EURoot DB is the database of the EURoot project "Enhancing resource uptake from roots under stress in cereal crops

the database on QTLs, genes and mutants involved in root growth under stress of the EURoot project "Enhancing resource uptake from roots under stress in cereal crops"
Chantal Hamelin


Coffee Genome Hub

The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.

the integrated portal for coffee

The research was funded by the French National Research Agency, Australian Research Council, Natural Sciences and Engineering Research Council of Canada, CNR-ENEA Agrifood Project of Italy, Funding Authority for Studies and Projects (FINEP) of Brazil, National Institutes of Science and Technology (INCT) of Brazil, the U.S. National Science Foundation and the College of Arts and Science, University at Buffalo.


The EURIGEN project "Genotyping for the Conservation and Valorization of European Rice Germplasm", is the Action 049 of the AGRI GEN RES program for conservation, characterisation, collection and utilization of genetic resources in agriculture funded by the European Commission - DG Agriculture and Rural Development. 

Eurigen Database manages genetic, phenotypic and genomic information on rice working collections of European institutions
Chantal Hamelin

European Commission - DG Agriculture and Rural Development


A Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases.

a Web portal for crossing cocoa phenotypic, genetic and genomic data from ICGD and TropGeneDB databases

Banana Genome Hub

The Banana Genome Hub centralises databases of genetic and genomic data for the musa acuminata crop Hub developed by Cirad and Bioversity and supported by the South Green Bioinformatics platform. Data available are the complete genome sequence along with gene structure, gene product information, metabolism, gene families, transcriptomics (ESTs, RNA-Seq), genetic markers (SSR, DArT, SNPs) and genetic maps.

the integrated crop portal for Musa




OryGenesDB is a database developed for rice reverse genetics. OryGenesDB contains FSTs (flanking sequence tags) of various mutagens and functional genomics data collected from both international insertion collections and the literature.

Insertion mutants of rice genes are catalogued by Flanking Sequence Tag (FST) information that can be readily accessed by this database.

Oryza Genes Database
Gaëtan Droc

Genoplante, EU (Cereal Gene Tags)



GNPAnnot is a Community Annotation System (CAS) for structural, functional and comparative annotation dedicated to green genomes see details of the project in the project section.

a generic Community Annotation System
Stéphanie Bocs

ANR Genoplante


TropGeneDB is a component of the South Green Bioinformatics Platform for the management of genetic, molecular and phenotypic data on tropical crop species. The most common data stored in TropGeneDB are molecular markers, QTLs (Quantitative Trait Loci), genetic and physical maps, genetic diversity, phenotypic diversity studies, and information on genetic resources (geographic origin, parentage, collection). TropGeneDB is organized on a crop basis with currently nine public modules (banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, sugarcane).

gene database for tropical plants
Chantal Hamelin, Manuel Ruiz

This project is mainly supported by CIRAD core funding.

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