South Green Publications
2014
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, et al. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science. 2014;345(6201):1181-4. Abstract
Jourda C, Cardi C, Mbéguié-A-Mbéguié D, Bocs S, Garsmeur O, D'Hont A, et al. Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. New Phytol. 2014;202(3):986-1000. Abstract
Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, et al. The coffee genome hub: a resource for coffee genomes. Nucleic Acids Res. 2014. Abstract
2013
Droc G, An G, Wu C, Hsing Y-, Hirochika H, Pereira A, et al. Mutant Resources for Functional Analysis of the Rice Genome. In: Zhang Q, Wing RA, editors. Genetics and Genomics of Rice. Vol 5. Springer New York; 2013. p. 81-115. (Plant Genetics and Genomics: Crops and Models; vol 5).
Riahi L, Zoghlami N, Fournier-Level A, Dereeper A, Le Cunff L, Laucou V, et al. Characterization of single nucleotide polymorphism in Tunisian grapevine genome and their potential for population genetics and evolutionary studies. Genetic Resources and Crop Evolution. 2013;60:1139-51.
Peralta M, Combes M-, Cenci A, Lashermes P, Dereeper A. SNiPloid: A Utility to Exploit High-Throughput SNP Data Derived from RNA-Seq in Allopolyploid Species. International Journal of Plant Genomics. 2013;2013. Abstract
Courtois B, Audebert A, Dardou A, Roques S, Ghneim-Herrera T, Droc G, et al. Genome-wide association mapping of root traits in a japonica rice panel. PLoS ONE. 2013;8(11):e78037. Abstract
Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, et al. BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Mol Biol. 2013;83(3):177-89. Abstract
Ranwez V, Holtz Y, Sarah G, Ardisson M, Santoni S, Glémin S, et al. Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat. BMC Bioinformatics. 2013;14(Suppl 15):S15.
Dussert S, Guerin C, Andersson M, Joët T, Tranbarger TJ, Pizot M, et al. Comparative transcriptome analysis of three oil palm fruit and seed tissues that differ in oil content and fatty acid composition. Plant Physiol. 2013;162(3):1337-58. Abstract
Frouin J, Filloux D, Taillebois J, Grenier C, Montes F, de Lamotte F, et al. Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Molecular Breeding. 2013:1-13.
Riahi L, Zoghlami N, Dereeper A, Laucou V, Mliki A, This P. Molecular characterization and evolutionary pattern of the 9- cis -epoxycarotenoid dioxygenase NCED1 gene in grapevine. Molecular Breeding. 2013;32:253-66.
Poncet V, Munoz F, Munzinger J, Pillon Y, Gomez C, Couderc M, et al. Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia. Molecular ecology. 2013;22:6163-78.
Gébelin V, Leclercq J, Leclercq J, Argout X, Chaidamsari T, Hu S, et al. The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness. Tree Physiol. 2013;33(10):1084-98. Abstract
Riahi L, Ayari B, Zoghlami N, Dereeper A, Laucou V, Mliki A, et al. High efficiency and informativeness of a set of SNP molecular markers in Tunisian local grapevines discrimination. Biochemical Systematics and Ecology. 2013;51:175-83.
Chabannes M, Baurens F-, Duroy P-, Bocs S, Vernerey M-, Rodier-Goud M, et al. Three infectious viral species lying in wait in the banana genome. J Virol. 2013;87(15):8624-37. Abstract
Duan C, Argout X, Gébelin V, Summo M, Dufayard JF, Leclercq J, et al. Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. BMC Genomics. 2013;14:30. Abstract