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South Green Publications

Submitted

Wollbrett J, Larmande P, de Lamotte F, Ruiz M. Clever generation of rich {SPARQL} queries from annotated relational schema: application to Semantic Web Service creation for biological databases.. Submitted;14:126.
Zevio S, El Hassouni N, Ruiz M, Larmande P. {AgroLD} indexing tools with ontological annotations.. Submitted;1795.
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, et al. S4BIODIV : Semantic for Biodiversity workshop.. Submitted;1933.
Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, et al. Agronomic Linked Data ({AgroLD}): A knowledge-based system to enable integrative biology in agronomy.. Submitted;13:1-17. Abstract
Jonquet C, Toulet A, Arnaud E, Aubin S, Yeumo ED, Emonet V, et al. Reusing the {NCBO} {BioPortal} technology for agronomy to build {AgroPortal}.. Submitted;1747.
Abbeloos R, Vasques Costa B, Edwards JD, Papoutsoglou E, Finkers R, Verouden M, et al. {BrAPI} - an Application Programming Interface for Plant Breeding Applications.. Submitted. Abstract
Luyen LN, Tireau A, Venkatesan A, Neveu P, Larmande P. Development of a knowledge system for big data: Case study to plant phenotyping data.. Submitted;13-15-June-2016.
Nti-Addae Y, Matthews D, Ulat VJ, Syed R, Sempere G, Petel A, et al. Benchmarking Database Systems for Genomic Selection Implementation.. Submitted:baz096. Abstract
Ngompé GT, Venkatesan A, El Hassouni N, Ruiz M, Larmande P. {AgroLD} {API}. An {API}-centric approach towards knowledge extraction in the agronomic linked data knowledge base,{AgroLD} {API}. Une architecture orientée services pour l?extraction de connaissances dans la base de données liées {AgroLD}.. Submitted;21:133-57.
Cubry P, Tranchant-Dubreuil C, Thuillet A-, Monat C, Ndjiondjop M-, Labadie K, et al. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.. Submitted;28:2274-2282.e6. Abstract
Sempéré G, Philippe F, Dereeper A, Ruiz M, Sarah G, Larmande P. Gigwa—Genotype investigator for genome-wide analyses.. Submitted;5:25. Abstract

2022

Sempéré G, Larmande P, Rouard M. Managing high-density genotyping data with Gigwa. In: Plant Bioinformatics. Vol 2443.; 2022. (Methods in Molecular Biology; vol 2443).

2020

Martin G, Cardi C, Sarah G, Ricci S, Jenny C, Fondi E, et al. Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana. The Plant Journal. 2020.

2019

Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, de Bellis F, et al. Gigwa v2—Extended and improved genotype investigator. GigaScience. 2019;8.
Larmande P, Sempéré G, Pétel A, Rouard M, Frouin J, Hueber Y, et al. Gigwa v2—Extended and improved genotype investigator. GigaScience. 2019.
Baurens F-, Martin G, Hervouet C, Salmon F, Yohomé D, Ricci S, et al. Recombination and large structural variations shape interspecific edible bananas genomes. Molecular biology and evolution. 2019;36:97-111.

2018

Venkatesan A, Ngompe GT, El Hassouni N, Chentli I, Guignon V, Jonquet C, et al. Agronomic Linked Data ({AgroLD}): a Knowledge-based System to Enable Integrative Biology in Agronomy.. 2018.
Larmande P, Venkatesan A, Zhang L, Ngompe GT, El Hassouni N, Chentli I, et al. Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLOS ONE. 2018.
Jonquet C, Toulet A, Arnaud E, Aubin S, Dzalé Yeumo E, Emonet V, et al. AgroPortal: A vocabulary and ontology repository for agronomy. Computers and Electronics in Agriculture. 2018;144:126-43.

2017

Cohen-Boulakia S, Belhajjame K, Collin O, Chopard J, Froidevaux C, Gaignard A, et al. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems. 2017;75:284-98.
Cenci A, Rouard M. Evolutionary Analyses of GRAS Transcription Factors in Angiosperms. Frontiers in Plant Science. 2017;8:273.
König-Ries B, Walls R, Kattge J, Benbernou S, Sack H, Arnaud E, et al. Preface. CEUR Workshop Proceedings. 2017;1933.

2016

Zevio S, El Hassouni N, Ruiz M, Larmande P. AgroLD indexing tools with ontological annotations. CEUR Workshop Proceedings. 2016;1795.
Guignon V, Hueber Y, Rouard M, Bocs S, Couvin D, de Lamotte F, et al. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology. 2016;7:6-9.
Mieulet D, Jolivet S, Rivard M, Cromer L, Vernet A, Mayonove P, et al. Turning rice meiosis into mitosis. Cell Research. 2016.